Transcript: lnc-DTHD1-3:3

Basic information

LNCipedia transcript ID: lnc-DTHD1-3:3 
LNCipedia gene ID: lnc-DTHD1-3
Ensembl Gene ID: ENSG00000250597
Ensembl Transcript ID: ENST00000505967
Location (hg38): chr4:34668766-34669432
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 299 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007510; ENST00000505967; ENST00000505967.1; RP11-725M22.1-003; OTTHUMT00000360735.1; NONHSAT095984
Alternative gene names: XLOC_003504; linc-DTHD1-2; ENSG00000250597; RP11-725M22.1; ENSG00000250597.1; OTTHUMG00000160471.1; ENSG00000250597.5; AC093689.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -193.7222 non-coding 
CPAT coding probability 1.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DTHD1-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DTHD1-3:3
3.1 lnc-DTHD1-3:3
4.0 lnc-DTHD1-3:3
4.1 lnc-DTHD1-3:3
5.0 lnc-DTHD1-3:3
5.1 lnc-GABRB1-94:4
5.2 lnc-DTHD1-3:3