Transcript: lnc-DTNB-4:1

Basic information

LNCipedia transcript ID: lnc-DTNB-4:1 
LNCipedia gene ID: lnc-DTNB-4
Location (hg38): chr2:25733760-25736588
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 265 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00005117; NONHSAT069670
Alternative gene names: XLOC_002026; linc-DTNB


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.1088 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DTNB-4:1 yes no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ASXL2-1:1
3.1 lnc-ASXL2-1:1
4.0 lnc-ASXL2-1:1
4.1 lnc-ASXL2-1:1
5.0 lnc-ASXL2-1:1
5.1 lnc-DNAJC27-23:1
5.2 lnc-DTNB-4:1