Transcript: lnc-DTNBP1-16:9

Basic information

LNCipedia transcript ID: lnc-DTNBP1-16:9 
LNCipedia gene ID: lnc-DTNBP1-16
Ensembl Gene ID: ENSG00000234261
Ensembl Transcript ID: ENST00000437648
Location (hg38): chr6:14976788-15090003
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1017 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011458; ENST00000437648; ENST00000437648.1; RP11-146I2.1-001; OTTHUMT00000039923.1; NONHSAT107862
Alternative gene names: XLOC_005618; linc-CCDC90A-6; ENSG00000234261; RP11-146I2.1; ENSG00000234261.1; OTTHUMG00000014290.1; ENSG00000234261.3; AL138720.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.7002 non-coding 
CPAT coding probability 2.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DTNBP1-16:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DTNBP1-4:1
3.1 lnc-DTNBP1-5:1
4.0 lnc-DTNBP1-5:1
4.1 lnc-DTNBP1-5:1
5.0 lnc-DTNBP1-5:1
5.1 lnc-C6orf62-130:9
5.2 lnc-DTNBP1-16:9