Transcript: lnc-DTWD1-7:5

Basic information

LNCipedia transcript ID: lnc-DTWD1-7:5 
LNCipedia gene ID: lnc-DTWD1-7
Ensembl Gene ID: ENSG00000259188
Ensembl Transcript ID: ENST00000560375
Location (hg38): chr15:49879604-49883523
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1284 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560375.1; CTD-2647E9.3-001; OTTHUMT00000418115.1; NONHSAT042396; ENST00000560375.5
Alternative gene names: ENSG00000259188.1; CTD-2647E9.3; OTTHUMG00000172369.1; ENSG00000259188.5; AC025040.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.9846 non-coding 
CPAT coding probability 1.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DTWD1-7:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FGF7-1:1
4.0 lnc-FGF7-1:1
4.1 lnc-FGF7-1:1
5.0 lnc-FGF7-1:1
5.1 lnc-CCNDBP1-88:5
5.2 lnc-DTWD1-7:5