Transcript: lnc-DUSP10-5:2

Basic information

LNCipedia transcript ID: lnc-DUSP10-5:2 
LNCipedia gene ID: lnc-DUSP10-5
Ensembl Gene ID: ENSG00000234754
Ensembl Transcript ID: ENST00000434398
Location (hg38): chr1:221332639-221335920
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 645 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434398; ENST00000434398.1; RP11-421L10.1-002; OTTHUMT00000091117.1; NONHSAT009639
Alternative gene names: ENSG00000234754; RP11-421L10.1; ENSG00000234754.1; OTTHUMG00000037427.2; C1orf140; AL445470.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.9087 non-coding 
CPAT coding probability 3.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DUSP10-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DUSP10-5:2
3.1 lnc-DUSP10-5:2
4.0 lnc-DUSP10-5:2
4.1 lnc-DUSP10-5:2
5.0 lnc-DUSP10-5:2
5.1 lnc-LEFTY2-65:3
5.2 lnc-DUSP10-5:2