Transcript: lnc-DUSP22-1:1

Basic information

LNCipedia transcript ID: lnc-DUSP22-1:1 
LNCipedia gene ID: lnc-DUSP22-1
Ensembl Gene ID: ENSG00000205653
Ensembl Transcript ID: ENST00000381078
Location (hg38): chr6:203313-206392
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2007 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000381078.1; RP3-416J7.5-001; OTTHUMT00000445712.1; NONHSAT105978
Alternative gene names: ENSG00000205653.1; RP3-416J7.5; OTTHUMG00000179311.1; AL035696.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.932 non-coding 
CPAT coding probability 17.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DUSP22-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL035696.1-1:1
4.0 lnc-AL035696.1-1:1
4.1 lnc-AL035696.1-1:1
5.0 lnc-AL035696.1-1:1
5.1 lnc-RIPK1-150:1
5.2 lnc-DUSP22-1:1