Transcript: lnc-DUSP26-2:2

Basic information

LNCipedia transcript ID: lnc-DUSP26-2:2 
LNCipedia gene ID: lnc-DUSP26-2
Ensembl Gene ID: ENSG00000254194
Ensembl Transcript ID: ENST00000518163
Location (hg38): chr8:33973701-34009592
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 411 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518163; ENST00000518163.1; RP1-273G13.3-001; OTTHUMT00000376663.1; NONHSAT125986; ENST00000518163.5
Alternative gene names: ENSG00000254194; RP1-273G13.3; ENSG00000254194.1; OTTHUMG00000163989.1; ENSG00000254194.5; AF279873.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.3888 non-coding 
CPAT coding probability 3.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DUSP26-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DUSP26-2:2
3.1 lnc-DUSP26-2:2
4.0 lnc-DUSP26-2:2
4.1 lnc-DUSP26-2:2
5.0 lnc-DUSP26-2:2
5.1 lnc-TTI2-12:2
5.2 lnc-DUSP26-2:2