Transcript: lnc-DYDC1-1:1

Basic information

LNCipedia transcript ID: lnc-DYDC1-1:1 
LNCipedia gene ID: lnc-DYDC1-1
Ensembl Gene ID: ENSG00000226659
Ensembl Transcript ID: ENST00000417559
RefSeq ID: NR_120661
Location (hg38): chr10:80529597-80535942
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 598 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00018009; ENST00000417559.1; RP11-137H2.4-001; OTTHUMT00000049090.1; NONHSAT015263; NR_120661; NR_120661.1
Alternative gene names: XLOC_008873; linc-DYDC1-5; ENSG00000226659.1; RP11-137H2.4; OTTHUMG00000018616.1; AC021028.1; LOC101929574


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.8178 non-coding 
CPAT coding probability 17.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DYDC1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DYDC1-1:1
3.1 lnc-DYDC1-1:1
4.0 lnc-DYDC1-1:1
4.1 lnc-DYDC1-1:1
5.0 lnc-DYDC1-1:1
5.1 lnc-VSIR-110:6
5.2 lnc-DYDC1-1:1