Transcript: lnc-EBF3-1:8

Basic information

LNCipedia transcript ID: lnc-EBF3-1:8 
LNCipedia gene ID: lnc-EBF3-1
Ensembl Gene ID: ENSG00000237224
Ensembl Transcript ID: ENST00000593883
Location (hg38): chr10:129700258-129701262
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 903 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000593883.2
Alternative gene names: ENSG00000237224.4; RP11-109A6.2; AL157832.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -145.7874 non-coding 
CPAT coding probability 1.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EBF3-1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-EBF3-1:8
4.1 lnc-EBF3-1:8
5.0 lnc-EBF3-1:8
5.1 lnc-ADAM12-25:9
5.2 lnc-EBF3-1:8