Transcript: lnc-ECEL1-2:2

Basic information

LNCipedia transcript ID: lnc-ECEL1-2:2 
LNCipedia gene ID: lnc-ECEL1-2
Ensembl Gene ID: ENSG00000224516
Ensembl Transcript ID: ENST00000439072
Location (hg38): chr2:232379759-232381037
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 356 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439072.1; AC068134.8-002; OTTHUMT00000330863.1; NONHSAT077403
Alternative gene names: ENSG00000224516.1; AC068134.8; OTTHUMG00000153355.1; ENSG00000224516.5; AC068134.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.8514 non-coding 
CPAT coding probability 42.89% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ECEL1-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ECEL1-2:2
4.0 lnc-ECEL1-2:2
4.1 lnc-ECEL1-2:2
5.0 lnc-ECEL1-2:2
5.1 lnc-NCL-15:2
5.2 lnc-ECEL1-2:2