Transcript: lnc-ECSCR-3:1

Basic information

LNCipedia transcript ID: lnc-ECSCR-3:1 
LNCipedia gene ID: lnc-ECSCR-3
Location (hg38): chr5:139467400-139468626
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1227 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000081395.1|FTMT21800009933.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.4447 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ECSCR-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ECSCR-3:1
5.0 lnc-ECSCR-3:1
5.1 lnc-DND1-37:1
5.2 lnc-ECSCR-3:1