Transcript: lnc-EDAR-5:1

Basic information

LNCipedia transcript ID: lnc-EDAR-5:1 
LNCipedia gene ID: lnc-EDAR-5
Location (hg38): chr2:108228868-108232205
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2671 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004374; NONHSAT073089
Alternative gene names: XLOC_002258; linc-ST6GAL2-9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.7123 non-coding 
CPAT coding probability 21.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EDAR-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EDAR-2:1
3.1 lnc-EDAR-5:1
4.0 lnc-EDAR-5:1
4.1 lnc-EDAR-5:1
5.0 lnc-EDAR-5:1
5.1 lnc-AFF3-106:1
5.2 lnc-EDAR-5:1