Transcript: lnc-EDC3-2:22

Basic information

LNCipedia transcript ID: lnc-EDC3-2:22 
LNCipedia gene ID: lnc-EDC3-2
Ensembl Gene ID: ENSG00000275527
Ensembl Transcript ID: ENST00000617850
Location (hg38): chr15:74598919-74599397
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 479 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000617850.1
Alternative gene names: ENSG00000275527.1; CTD-3154N5.2; AC100835.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -70.726 non-coding 
CPAT coding probability 2.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EDC3-2:22 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-EDC3-7:1
4.1 lnc-EDC3-2:22
5.0 lnc-EDC3-2:22
5.1 lnc-PKM-65:22
5.2 lnc-EDC3-2:22