Transcript: lnc-EDN2-1:1

Basic information

LNCipedia transcript ID: lnc-EDN2-1:1 
LNCipedia gene ID: lnc-EDN2-1
Ensembl Gene ID: ENSG00000229901
Ensembl Transcript ID: ENST00000429109
RefSeq ID: NR_135817
Location (hg38): chr1:41375004-41375669
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 394 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000429109.1; RP11-399E6.4-001; OTTHUMT00000015643.1; NONHSAT002697; NR_135817.1
Alternative gene names: ENSG00000229901.1; RP11-399E6.4; OTTHUMG00000005714.1; AC093151.2; LOC101929901


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.8919 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EDN2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EDN2-1:1
4.0 lnc-EDN2-1:1
4.1 lnc-EDN2-1:1
5.0 lnc-EDN2-1:1
5.1 lnc-HIVEP3-3:1
5.2 lnc-EDN2-1:1