Transcript: lnc-EDRF1-1:19

Basic information

LNCipedia transcript ID: lnc-EDRF1-1:19 
LNCipedia gene ID: lnc-EDRF1-1
Location (hg38): chr10:125683243-125709675
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3147 bp
Exons: 5
Sources: Broad Institute
Alternative transcript names: TCONS_00017681
Alternative gene names: XLOC_008661; linc-C10orf137-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.9232 non-coding 
CPAT coding probability 5.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EDRF1-1:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf137-1:1
3.1 lnc-C10orf137-1:2
4.0 lnc-C10orf137-1:2
4.1 lnc-C10orf137-1:2
5.0 lnc-C10orf137-1:2
5.1 lnc-EDRF1-1:3
5.2 lnc-EDRF1-1:19