Transcript: lnc-EDRF1-1:20

Basic information

LNCipedia transcript ID: lnc-EDRF1-1:20 
LNCipedia gene ID: lnc-EDRF1-1
Ensembl Gene ID: ENSG00000228021
Ensembl Transcript ID: ENST00000415305
RefSeq ID: NR_033848
Location (hg38): chr10:125683243-125709677
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3149 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000415305.1; RP11-383C5.3-001; OTTHUMT00000050916.1; NR_033848; ENST00000415305.6; NR_033848.1
Alternative gene names: ENSG00000228021.1; RP11-383C5.3; OTTHUMG00000019230.1; ENSG00000228021.7; AL158835.1; LOC283038; AL158835.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.9232 non-coding 
CPAT coding probability 5.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EDRF1-1:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C10orf137-1:1
4.0 lnc-C10orf137-1:1
4.1 lnc-C10orf137-1:1
5.0 lnc-C10orf137-1:1
5.1 lnc-EDRF1-1:4
5.2 lnc-EDRF1-1:20