Transcript: lnc-EDRF1-1:25

Basic information

LNCipedia transcript ID: lnc-EDRF1-1:25 
LNCipedia gene ID: lnc-EDRF1-1
Ensembl Gene ID: ENSG00000228021
Ensembl Transcript ID: ENST00000449693
Location (hg38): chr10:125683293-125700609
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 371 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017888; ENST00000449693.1; RP11-383C5.3-002; OTTHUMT00000050917.1; NONHSAT016890; ENST00000449693.5
Alternative gene names: XLOC_008661; linc-C10orf137-1; ENSG00000228021.1; RP11-383C5.3; OTTHUMG00000019230.1; ENSG00000228021.3; ENSG00000228021.7; AL158835.1; AL158835.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.9609 non-coding 
CPAT coding probability 11.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EDRF1-1:25 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf137-1:4
3.1 lnc-C10orf137-1:5
4.0 lnc-C10orf137-1:5
4.1 lnc-C10orf137-1:5
5.0 lnc-C10orf137-1:5
5.1 lnc-EDRF1-1:9
5.2 lnc-EDRF1-1:25