Transcript: lnc-EDRF1-1:26

Basic information

LNCipedia transcript ID: lnc-EDRF1-1:26 
LNCipedia gene ID: lnc-EDRF1-1
Ensembl Gene ID: ENSG00000228021
Ensembl Transcript ID: ENST00000597502
Location (hg38): chr10:125697529-125707028
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 818 bp
Exons: 5
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000597502.2; ENST00000597502.6
Alternative gene names: ENSG00000228021.3; RP11-383C5.3; ENSG00000228021.7; AL158835.1; AL158835.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.9336 non-coding 
CPAT coding probability 3.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EDRF1-1:26 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C10orf137-1:10
4.0 lnc-C10orf137-1:10
4.1 lnc-C10orf137-1:10
5.0 lnc-C10orf137-1:10
5.1 lnc-EDRF1-1:10
5.2 lnc-EDRF1-1:26