Transcript: lnc-EEF2-1:1

Basic information

LNCipedia transcript ID: lnc-EEF2-1:1 
LNCipedia gene ID: lnc-EEF2-1
Location (hg38): chr19:3986724-3987389
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 666 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr19_974_-
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.0788 non-coding 
CPAT coding probability 2.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EEF2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EEF2-1:1
4.0 lnc-EEF2-1:1
4.1 lnc-EEF2-1:1
5.0 lnc-EEF2-1:1
5.1 lnc-ZNF77-59:1
5.2 lnc-EEF2-1:1