Transcript: lnc-EFCAB1-2:1

Basic information

LNCipedia transcript ID: lnc-EFCAB1-2:1 
LNCipedia gene ID: lnc-EFCAB1-2
Ensembl Gene ID: ENSG00000253702
Ensembl Transcript ID: ENST00000523038
Location (hg38): chr8:48597458-48621018
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 559 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523038; ENST00000523038.1; RP11-567J20.1-001; OTTHUMT00000377773.1; NONHSAT126488
Alternative gene names: ENSG00000253702; RP11-567J20.1; ENSG00000253702.1; OTTHUMG00000164200.1; AC026904.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.7673 non-coding 
CPAT coding probability 14.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EFCAB1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EFCAB1-2:1
3.1 lnc-EFCAB1-2:1
4.0 lnc-EFCAB1-2:1
4.1 lnc-EFCAB1-2:1
5.0 lnc-EFCAB1-2:1
5.1 lnc-SFRP1-63:1
5.2 lnc-EFCAB1-2:1