Transcript: lnc-EFCAB8-1:3

Basic information

LNCipedia transcript ID: lnc-EFCAB8-1:3 
LNCipedia gene ID: lnc-EFCAB8-1
Location (hg38): chr20:32854799-32858751
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3953 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA841:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -34.7265 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EFCAB8-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-EFCAB8-1:3
4.1 lnc-EFCAB8-1:3
5.0 lnc-EFCAB8-1:3
5.1 lnc-BPIFB2-2:2
5.2 lnc-EFCAB8-1:3