Transcript: lnc-EFCAB9-30:1

Basic information

LNCipedia transcript ID: lnc-EFCAB9-30:1 
LNCipedia gene ID: lnc-EFCAB9-30
RefSeq ID: NR_130933
Location (hg38): chr5:172285597-172298376
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1802 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_130933.1
Alternative gene names: LOC100288254


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -0.5661 non-coding 
CPAT coding probability 33.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EFCAB9-30:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-ATP6V0E1-30:1
5.1 lnc-ATP6V0E1-30:1
5.2 lnc-EFCAB9-30:1