Transcript: lnc-EFEMP1-3:2

Basic information

LNCipedia transcript ID: lnc-EFEMP1-3:2 
LNCipedia gene ID: lnc-EFEMP1-3
Ensembl Gene ID: ENSG00000233251
Ensembl Transcript ID: ENST00000447423
Location (hg38): chr2:56175551-56184913
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1623 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447423; ENST00000447423.2; AC007743.1-201; NONHSAT070823
Alternative gene names: ENSG00000233251; AC007743.1; ENSG00000233251.2; OTTHUMG00000152032.1; ENSG00000233251.3; ENSG00000233251.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 108.3934 coding 
CPAT coding probability 18.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-EFEMP1-3:2 yes no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EFEMP1-3:2
3.1 lnc-EFEMP1-3:2
4.0 lnc-EFEMP1-3:2
4.1 lnc-EFEMP1-3:2
5.0 lnc-EFEMP1-3:2
5.1 lnc-PPP4R3B-18:14
5.2 lnc-EFEMP1-3:2