Transcript: lnc-EFEMP1-3:5

Basic information

LNCipedia transcript ID: lnc-EFEMP1-3:5 
LNCipedia gene ID: lnc-EFEMP1-3
Location (hg38): chr2:56179999-56183674
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 472 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT070825
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.4515 non-coding 
CPAT coding probability 5.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EFEMP1-3:5 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EFEMP1-3:5
4.0 lnc-EFEMP1-3:5
4.1 lnc-EFEMP1-3:5
5.0 lnc-EFEMP1-3:5
5.1 lnc-PPP4R3B-18:16
5.2 lnc-EFEMP1-3:5