Transcript: lnc-EFEMP1-3:9

Basic information

LNCipedia transcript ID: lnc-EFEMP1-3:9 
LNCipedia gene ID: lnc-EFEMP1-3
Location (hg38): chr2:56173881-56185778
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3517 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000233251.3|ENCT00000242405.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.4049 non-coding 
CPAT coding probability 72.73% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-EFEMP1-3:9 yes no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-EFEMP1-3:9
5.0 lnc-EFEMP1-3:9
5.1 lnc-PPP4R3B-18:2
5.2 lnc-EFEMP1-3:9