Transcript: lnc-EFR3A-1:3

Basic information

LNCipedia transcript ID: lnc-EFR3A-1:3 
LNCipedia gene ID: lnc-EFR3A-1
Ensembl Gene ID: ENSG00000253507
Ensembl Transcript ID: ENST00000519005
Location (hg38): chr8:131310472-131317506
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 731 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519005; ENST00000519005.1; CTD-2501M5.1-003; OTTHUMT00000380088.1; NONHSAT129173
Alternative gene names: ENSG00000253507; CTD-2501M5.1; ENSG00000253507.1; OTTHUMG00000164760.1; ENSG00000253507.5; AC104257.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.6929 non-coding 
CPAT coding probability 3.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EFR3A-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EFR3A-1:3
3.1 lnc-EFR3A-1:3
4.0 lnc-EFR3A-1:3
4.1 lnc-EFR3A-1:3
5.0 lnc-EFR3A-1:3
5.1 lnc-MYC-31:6
5.2 lnc-EFR3A-1:3