Transcript: lnc-EFR3A-1:6

Basic information

LNCipedia transcript ID: lnc-EFR3A-1:6 
LNCipedia gene ID: lnc-EFR3A-1
Location (hg38): chr8:131308615-131317583
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 784 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000253507.1|ENST00000519695.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 13.6929 non-coding 
CPAT coding probability 1.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EFR3A-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-EFR3A-1:6
5.0 lnc-EFR3A-1:6
5.1 lnc-MYC-31:4
5.2 lnc-EFR3A-1:6