Transcript: lnc-EFR3A-2:1

Basic information

LNCipedia transcript ID: lnc-EFR3A-2:1 
LNCipedia gene ID: lnc-EFR3A-2
Location (hg38): chr8:131053600-131129898
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 315 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014859; NONHSAT129165
Alternative gene names: XLOC_006928; linc-EFR3A-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.2301 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EFR3A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EFR3A-2:1
3.1 lnc-EFR3A-2:1
4.0 lnc-EFR3A-2:1
4.1 lnc-EFR3A-2:1
5.0 lnc-EFR3A-2:1
5.1 lnc-MYC-2:45
5.2 lnc-EFR3A-2:1