Transcript: lnc-EFR3B-1:1

Basic information

LNCipedia transcript ID: lnc-EFR3B-1:1 
LNCipedia gene ID: lnc-EFR3B-1
Location (hg38): chr2:25157194-25159137
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1944 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000567599.1; RP11-509E16.1-001; OTTHUMT00000431074.1; NONHSAT069640
Alternative gene names: ENSG00000261452.1; RP11-509E16.1; OTTHUMG00000175787.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.7045 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EFR3B-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EFR3B-1:1
4.0 lnc-EFR3B-1:1
4.1 lnc-EFR3B-1:1
5.0 lnc-EFR3B-1:1
5.1 lnc-SNX17-44:1
5.2 lnc-EFR3B-1:1