Transcript: lnc-EGR2-1:1

Basic information

LNCipedia transcript ID: lnc-EGR2-1:1 
LNCipedia gene ID: lnc-EGR2-1
Ensembl Gene ID: ENSG00000238280
Ensembl Transcript ID: ENST00000425290
Location (hg38): chr10:62793562-62805887
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 688 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425290.1; RP11-436D10.3-001; OTTHUMT00000048244.1; NONHSAT013587
Alternative gene names: ENSG00000238280.1; RP11-436D10.3; OTTHUMG00000018307.1; AL133417.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.425 non-coding 
CPAT coding probability 11.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EGR2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EGR2-1:1
4.0 lnc-EGR2-1:1
4.1 lnc-EGR2-1:1
5.0 lnc-EGR2-1:1
5.1 lnc-C10orf105-93:2
5.2 lnc-EGR2-1:1