Transcript: lnc-EHD3-3:1

Basic information

LNCipedia transcript ID: lnc-EHD3-3:1 
LNCipedia gene ID: lnc-EHD3-3
Ensembl Gene ID: ENSG00000228563
Ensembl Transcript ID: ENST00000435713
Location (hg38): chr2:31526942-31563464
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 646 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000435713; ENST00000435713.1; AL133247.2-001; OTTHUMT00000325125.1; NONHSAT069941
Alternative gene names: ENSG00000228563; AL133247.2; ENSG00000228563.1; OTTHUMG00000152058.1; AL133247.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -223.7116 non-coding 
CPAT coding probability 2.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EHD3-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EHD3-2:1
3.1 lnc-EHD3-3:1
4.0 lnc-EHD3-3:1
4.1 lnc-EHD3-3:1
5.0 lnc-EHD3-3:1
5.1 lnc-LTBP1-26:1
5.2 lnc-EHD3-3:1