Transcript: lnc-EID1-1:1

Basic information

LNCipedia transcript ID: lnc-EID1-1:1 
LNCipedia gene ID: lnc-EID1-1
Ensembl Gene ID: ENSG00000259700
Ensembl Transcript ID: ENST00000560237
Location (hg38): chr15:48810701-48811588
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 765 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560237.1; RP11-485O10.3-001; OTTHUMT00000417151.1; NONHSAT042356
Alternative gene names: ENSG00000259700.1; RP11-485O10.3; OTTHUMG00000172160.1; ENSG00000259700.2; ENSG00000259700.3; AC012379.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -132.4687 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EID1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EID1-1:1
4.0 lnc-EID1-1:1
4.1 lnc-EID1-1:1
5.0 lnc-EID1-1:1
5.1 lnc-CCNDBP1-72:1
5.2 lnc-EID1-1:1