Transcript: lnc-EID1-4:1

Basic information

LNCipedia transcript ID: lnc-EID1-4:1 
LNCipedia gene ID: lnc-EID1-4
Ensembl Gene ID: ENSG00000259705
Ensembl Transcript ID: ENST00000558061
Location (hg38): chr15:48645951-48652016
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1943 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558061.1; RP11-227D13.1-001; OTTHUMT00000417148.1; NONHSAT042347
Alternative gene names: ENSG00000259705.1; RP11-227D13.1; OTTHUMG00000172157.1; AC084757.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.8873 non-coding 
CPAT coding probability 38.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-EID1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EID1-4:1
4.0 lnc-EID1-4:1
4.1 lnc-EID1-4:1
5.0 lnc-EID1-4:1
5.1 lnc-CCNDBP1-70:5
5.2 lnc-EID1-4:1