Transcript: lnc-EIF2AK3-4:78

Basic information

LNCipedia transcript ID: lnc-EIF2AK3-4:78 
LNCipedia gene ID: lnc-EIF2AK3-4
Location (hg38): chr2:88831187-88861923
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 253 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000418209; ENST00000418209.1; IGKJ5-002; OTTHUMT00000323485.1; NONHSAT072222
Alternative gene names: ENSG00000231486; AC096579.7; ENSG00000231486.3; IGKJ5; OTTHUMG00000151686.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -223.0016 non-coding 
CPAT coding probability 6.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EIF2AK3-4:78 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF2AK3-3:2
3.1 lnc-EIF2AK3-4:2
4.0 lnc-AC110080.1-4:45
4.1 lnc-AC110080.1-4:45
5.0 lnc-AC110080.1-4:45
5.1 lnc-ZNF514-106:33
5.2 lnc-EIF2AK3-4:78