Transcript: lnc-EIF2AK4-1:5

Basic information

LNCipedia transcript ID: lnc-EIF2AK4-1:5 
LNCipedia gene ID: lnc-EIF2AK4-1
Location (hg38): chr15:39921042-39924898
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2729 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000499797; TCONS_00023260
Alternative gene names: ENSG00000246863; XLOC_011218; linc-EIF2AK4; AC012377.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.3327 non-coding 
CPAT coding probability 4.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EIF2AK4-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF2AK4-1:4
3.1 lnc-EIF2AK4-1:5
4.0 lnc-EIF2AK4-1:5
4.1 lnc-EIF2AK4-1:5
5.0 lnc-EIF2AK4-1:5
5.1 lnc-TMEM62-81:9
5.2 lnc-EIF2AK4-1:5