Transcript: lnc-EIF2AK4-1:6

Basic information

LNCipedia transcript ID: lnc-EIF2AK4-1:6 
LNCipedia gene ID: lnc-EIF2AK4-1
Ensembl Gene ID: ENSG00000246863
Ensembl Transcript ID: ENST00000558675
Location (hg38): chr15:39921070-39925880
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4811 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558675.1; RP11-325N19.3-002; OTTHUMT00000418454.1; NONHSAT041777
Alternative gene names: ENSG00000246863.2; RP11-325N19.3; OTTHUMG00000172417.1; AC012377.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.3327 non-coding 
CPAT coding probability 3.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EIF2AK4-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EIF2AK4-1:6
4.0 lnc-EIF2AK4-1:6
4.1 lnc-EIF2AK4-1:6
5.0 lnc-EIF2AK4-1:6
5.1 lnc-TMEM62-81:11
5.2 lnc-EIF2AK4-1:6