Transcript: lnc-EIF2B1-1:2

Basic information

LNCipedia transcript ID: lnc-EIF2B1-1:2 
LNCipedia gene ID: lnc-EIF2B1-1
RefSeq ID: NR_110049
Location (hg38): chr12:123581066-123584327
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2316 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00020259; NONHSAT031598; NR_110049; NR_110049.2
Alternative gene names: XLOC_010229; linc-RILPL1-1; LOC101927415


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.8091 non-coding 
CPAT coding probability 4.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EIF2B1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF2B1-1:2
3.1 lnc-EIF2B1-1:2
4.0 lnc-EIF2B1-1:2
4.1 lnc-EIF2B1-1:2
5.0 lnc-EIF2B1-1:2
5.1 lnc-SBNO1-11:12
5.2 lnc-EIF2B1-1:2