Transcript: lnc-EIF4A2-1:1

Basic information

LNCipedia transcript ID: lnc-EIF4A2-1:1 
LNCipedia gene ID: lnc-EIF4A2-1
Ensembl Gene ID: ENSG00000231724
Ensembl Transcript ID: ENST00000434957
Location (hg38): chr3:186807692-186818121
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005685; ENST00000434957.1; RP11-573D15.3-001; OTTHUMT00000344487.1; NONHSAT093867
Alternative gene names: XLOC_002961; linc-ADIPOQ; ENSG00000231724.1; RP11-573D15.3; OTTHUMG00000156519.1; AC112907.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.728 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EIF4A2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF4A2-1:1
3.1 lnc-EIF4A2-1:1
4.0 lnc-EIF4A2-1:1
4.1 lnc-EIF4A2-1:1
5.0 lnc-EIF4A2-1:1
5.1 lnc-FAM131A-43:1
5.2 lnc-EIF4A2-1:1