Transcript: lnc-ELAC2-4:1

Basic information

LNCipedia transcript ID: lnc-ELAC2-4:1 
LNCipedia gene ID: lnc-ELAC2-4
Ensembl Gene ID: ENSG00000227274
Ensembl Transcript ID: ENST00000445508
RefSeq ID: NR_104605
Location (hg38): chr17:12671862-12706135
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1143 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000445508.1; AC005358.3-001; OTTHUMT00000129953.1; NONHSAT145699; NR_104605; NR_104605.1
Alternative gene names: ENSG00000227274.1; AC005358.3; OTTHUMG00000058769.1; AC005358.1; LOC101928418


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.1934 non-coding 
CPAT coding probability 6.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ELAC2-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ELAC2-4:1
4.0 lnc-ELAC2-4:1
4.1 lnc-ELAC2-4:1
5.0 lnc-ELAC2-4:1
5.1 lnc-GAS7-22:1
5.2 lnc-ELAC2-4:1