Transcript: lnc-ELAVL4-11:1

Basic information

LNCipedia transcript ID: lnc-ELAVL4-11:1 
LNCipedia gene ID: lnc-ELAVL4-11
Ensembl Gene ID: ENSG00000230114
Ensembl Transcript ID: ENST00000420071
Location (hg38): chr1:49257411-49269285
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 566 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420071.1; RP11-141A19.2-001; OTTHUMT00000022330.1
Alternative gene names: ENSG00000230114.1; RP11-141A19.2; OTTHUMG00000008156.1; AL590432.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.473 non-coding 
CPAT coding probability 1.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ELAVL4-11:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL645730.2-1:1
4.0 lnc-AL645730.2-1:1
4.1 lnc-AL645730.2-1:1
5.0 lnc-AL645730.2-1:1
5.1 lnc-CDKN2C-31:1
5.2 lnc-ELAVL4-11:1