Transcript: lnc-ELFN1-5:1

Basic information

LNCipedia transcript ID: lnc-ELFN1-5:1 
LNCipedia gene ID: lnc-ELFN1-5
Ensembl Gene ID: ENSG00000176349
Ensembl Transcript ID: ENST00000402221
Location (hg38): chr7:1838586-1849931
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2967 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000402221.4
Alternative gene names: ENSG00000176349.11; AC110781.3; AC104129.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.9948 non-coding 
CPAT coding probability 90.58% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ELFN1-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC110781.3.1-2:2
4.1 lnc-AC110781.3.1-2:2
5.0 lnc-AC110781.3.1-2:2
5.1 lnc-GPER1-37:1
5.2 lnc-ELFN1-5:1