Transcript: lnc-ELFN2-1:1

Basic information

LNCipedia transcript ID: lnc-ELFN2-1:1 
LNCipedia gene ID: lnc-ELFN2-1
Ensembl Gene ID: ENSG00000237862
Ensembl Transcript ID: ENST00000445088
RefSeq ID: NR_110515
Location (hg38): chr22:37352190-37354839
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1965 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000445088; ENST00000445088.1; RP1-63G5.7-001; OTTHUMT00000318901.1; NR_110515.1
Alternative gene names: ENSG00000237862; RP1-63G5.7; ENSG00000237862.1; OTTHUMG00000150559.1; Z94160.1; LOC100506271


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.7363 non-coding 
CPAT coding probability 60.66% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ELFN2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ELFN2-1:2
3.1 lnc-ELFN2-1:1
4.0 lnc-ELFN2-1:1
4.1 lnc-ELFN2-1:1
5.0 lnc-ELFN2-1:1
5.1 lnc-MYH9-22:3
5.2 lnc-ELFN2-1:1