Transcript: lnc-ELP4-12:1

Basic information

LNCipedia transcript ID: lnc-ELP4-12:1 
LNCipedia gene ID: lnc-ELP4-12
Location (hg38): chr11:31885774-31917941
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 635 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT018637
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.6712 non-coding 
CPAT coding probability 1.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ELP4-12:1 yes no no no

Available literature

  1. Pavlaki (2018), The long non-coding RNA <i>Paupar</i> promotes KAP1-dependent chromatin changes and regulates olfactory bulb neurogenesis., EMBO J.
  2. Vance (2014), The long non-coding RNA Paupar regulates the expression of both local and distal genes., EMBO J.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ELP4-4:3
4.0 lnc-ELP4-4:3
4.1 lnc-ELP4-4:3
5.0 lnc-ELP4-4:3
5.1 lnc-QSER1-68:1
5.2 lnc-ELP4-12:1