Transcript: lnc-EMB-4:6

Basic information

LNCipedia transcript ID: lnc-EMB-4:6 
LNCipedia gene ID: lnc-EMB-4
Location (hg38): chr5:51377098-51383660
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2665 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000559112.1; CTD-2314G24.2-001; OTTHUMT00000415591.1
Alternative gene names: ENSG00000259663.1; CTD-2314G24.2; OTTHUMG00000171880.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.1663 non-coding 
CPAT coding probability 4.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EMB-4:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EMB-5:1
4.0 lnc-EMB-4:6
4.1 lnc-EMB-4:6
5.0 lnc-EMB-4:6
5.1 lnc-ACTBL2-59:1
5.2 lnc-EMB-4:6