Transcript: lnc-EMC2-3:1

Basic information

LNCipedia transcript ID: lnc-EMC2-3:1 
LNCipedia gene ID: lnc-EMC2-3
Location (hg38): chr8:108252066-108259487
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 529 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014830; NONHSAT128271
Alternative gene names: XLOC_006900; linc-TTC35-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.786 non-coding 
CPAT coding probability 6.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EMC2-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC35-3:1
3.1 lnc-TTC35-3:1
4.0 lnc-TTC35-3:1
4.1 lnc-TTC35-3:1
5.0 lnc-TTC35-3:1
5.1 lnc-COLEC10-49:1
5.2 lnc-EMC2-3:1