Transcript: lnc-EMC3-1:16

Basic information

LNCipedia transcript ID: lnc-EMC3-1:16 
LNCipedia gene ID: lnc-EMC3-1
Ensembl Gene ID: ENSG00000206567
Ensembl Transcript ID: ENST00000383808
Location (hg38): chr3:10006418-10011095
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1897 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000383808.2; AC022007.5-001; OTTHUMT00000339469.1; ENST00000383808.6
Alternative gene names: ENSG00000206567.4; AC022007.5; OTTHUMG00000155325.2; ENSG00000206567.5; ENSG00000206567.9; AC022007.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.4336 non-coding 
CPAT coding probability 29.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EMC3-1:16 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRRT3-1:5
4.0 lnc-TMEM111-1:11
4.1 lnc-TMEM111-1:11
5.0 lnc-TMEM111-1:11
5.1 lnc-EMC3-1:6
5.2 lnc-EMC3-1:16