Transcript: lnc-EMC8-6:3

Basic information

LNCipedia transcript ID: lnc-EMC8-6:3 
LNCipedia gene ID: lnc-EMC8-6
Ensembl Gene ID: ENSG00000261177
Ensembl Transcript ID: ENST00000563931
Location (hg38): chr16:86081409-86089526
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 7430 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563931.1; RP11-805I24.1-001; OTTHUMT00000431721.1; NONHSAT144165
Alternative gene names: ENSG00000261177.1; RP11-805I24.1; OTTHUMG00000176285.1; AC135012.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.2901 non-coding 
CPAT coding probability 52.23% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-EMC8-6:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC092327.1-5:1
4.0 lnc-AC092327.1-5:1
4.1 lnc-AC092327.1-5:1
5.0 lnc-AC092327.1-5:1
5.1 lnc-MTHFSD-5:10
5.2 lnc-EMC8-6:3