Transcript: lnc-EMID1-1:1

Basic information

LNCipedia transcript ID: lnc-EMID1-1:1 
LNCipedia gene ID: lnc-EMID1-1
Ensembl Gene ID: ENSG00000237015
Ensembl Transcript ID: ENST00000433125
Location (hg38): chr22:29260889-29262037
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 385 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000433125.1; CTA-984G1.5-001; OTTHUMT00000321554.1; NONHSAT084685
Alternative gene names: ENSG00000237015.1; CTA-984G1.5; OTTHUMG00000151156.1; AL031186.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.432 non-coding 
CPAT coding probability 5.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EMID1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EMID1-1:1
4.0 lnc-EMID1-1:1
4.1 lnc-EMID1-1:1
5.0 lnc-EMID1-1:1
5.1 lnc-OSBP2-27:1
5.2 lnc-EMID1-1:1