Transcript: lnc-EMP1-6:1

Basic information

LNCipedia transcript ID: lnc-EMP1-6:1 
LNCipedia gene ID: lnc-EMP1-6
Ensembl Gene ID: ENSG00000277935
Ensembl Transcript ID: ENST00000621825
Location (hg38): chr12:13540231-13544540
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 546 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000621825.1
Alternative gene names: ENSG00000277935.1; RP11-4N23.4; AC007527.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -137.4107 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EMP1-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-EMP1-6:1
4.1 lnc-EMP1-6:1
5.0 lnc-EMP1-6:1
5.1 lnc-BCL2L14-39:1
5.2 lnc-EMP1-6:1