Transcript: lnc-EMP2-1:4

Basic information

LNCipedia transcript ID: lnc-EMP2-1:4 
LNCipedia gene ID: lnc-EMP2-1
Location (hg38): chr16:9753415-9758038
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4624 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000562861.1; RP11-297M9.2-001; OTTHUMT00000435165.1; NONHSAT140479
Alternative gene names: ENSG00000260432.1; RP11-297M9.2; OTTHUMG00000177064.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.0856 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EMP2-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GRIN2A-1:1
4.0 lnc-GRIN2A-1:1
4.1 lnc-GRIN2A-1:1
5.0 lnc-GRIN2A-1:1
5.1 lnc-PARN-87:2
5.2 lnc-EMP2-1:4